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Hasegawa Co Ltd mega x software
Mega X Software, supplied by Hasegawa Co Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mega+software/mega+x/pmc12979812-190-29-1
Average 86 stars, based on 1 article reviews
mega x software - by Bioz Stars, 2026-09
86/100 stars

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Article Title: European Culex pipiens Populations Carry Different Strains of Wolbachia pipientis
Article Snippet: The method for evolutionary distance was selected by using the model selector in MEGA, showing that the Hasegawa–Kishino–Yano model should be used.

Article Title: Development of a Specific PCR Assay for Theileria sp. Yokoyama and Assessment of Its Potential to Cause Anemia in Cattle
Article Snippet: A maximum likelihood phylogenetic tree was then constructed based on the Hasegawa–Kishino–Yano substitution model (G + I) using MEGA [ , ].

Article Title: “Mi Casa, Tu Casa”: the coati nest as a hub of Trypanosoma cruzi transmission in the southern Pantanal biome revealed by molecular blood meal source identification in triatomines
Article Snippet: For the cyt b gene marker, NJ method was applied using the Kimura 2-parameter plus gamma distributed rate variation among sites model (K2P + G) and ML, using Hasegawa–Kishino–Yano model plus gamma distribution (HKY + G), as determined by the best-fit model of DNA substitution command using the Bayesian information criterion in MEGA.

Construct:

Article Title: Population genetic structure and historical demography of the population of forest elephants in Côte d’Ivoire
Article Snippet: The software GenAIEx version 6.51b2 was also used to perform a Mantel test to evaluate a pattern of isolation by distance (IBD) taking into account the genetic distance and the geographical distance between samples [ ] Tajima’s (D) [ ] and Fu’s (Fs) [ ] tests were conducted in DnaSP to assess neutrality and as a first estimate of potential population sizes changes in the past [ ]. .. The phylogenetic tree was constructed using Unweighted pair group method with arithmetic mean (UPGMA) with the MEGA software [ ] under Hasegawa–Kishono–Yano (HKY+G) model (which is the closest available MEGA model to GTR which was the best nucleotide substitution model determined with jModelTest 2.1.10 [ ]. ..

Article Title: A low pathogenic avian influenza A/Mallard/South Korea/KNU2019-34/2019 (H1N1) virus has the potential to increase the mammalian pathogenicity.
Article Snippet: .. Subsequently, all 436 phylogenetic trees were constructed using the maximum-likelihood method under the Hasegawa-437 Kishino-Yano (HKY) model with gamma-distributed rates among sites (HYK + G) models, which was 438 selected by finding the best-fit substitution model in MEGA software, and the operation was repeated 439 1,000 times. ..

Article Title: A low pathogenic avian influenza A/Mallard/South Korea/KNU2019-34/2019 (H1N1) virus has the potential to increase the mammalian pathogenicity
Article Snippet: .. Subsequently, all phylogenetic trees were constructed using the maximum-likelihood method under the Hasegawa-Kishino-Yano (HKY) model with gamma-distributed rates among sites (HYK + G) models, which was selected by finding the best-fit substitution model in MEGA software, and the operation was repeated 1000 times. ..

Article Title: Epidemiological and genetic variation analysis of emerging porcine circovirus type 2 in Henan Province, 2023
Article Snippet: .. According to the MODELS program in the Molecular Evolutionary Genetics Analysis (MEGA) software (v.11.0), the ORF2 phylogenetic tree was constructed using the Maximum Likelihood method with the Hasegawa-Kishino-Yano model and a discrete Gamma distribution (HKY + G) to account for evolutionary rate differences among sites ( ). ..

Software:

Article Title: Population genetic structure and historical demography of the population of forest elephants in Côte d’Ivoire
Article Snippet: The software GenAIEx version 6.51b2 was also used to perform a Mantel test to evaluate a pattern of isolation by distance (IBD) taking into account the genetic distance and the geographical distance between samples [ ] Tajima’s (D) [ ] and Fu’s (Fs) [ ] tests were conducted in DnaSP to assess neutrality and as a first estimate of potential population sizes changes in the past [ ]. .. The phylogenetic tree was constructed using Unweighted pair group method with arithmetic mean (UPGMA) with the MEGA software [ ] under Hasegawa–Kishono–Yano (HKY+G) model (which is the closest available MEGA model to GTR which was the best nucleotide substitution model determined with jModelTest 2.1.10 [ ]. ..

Article Title: Cryptic and Non-Cryptic Diversity in Cleptoparasitic Bees of the Genus Stelis Panzer, 1806, Subgenus Stelidomorpha Morawitz, 1875, with a Description of New Species from the Arabian Peninsula (Hymenoptera, Megachilidae)
Article Snippet: .. Maximum Likelihood (ML) and Maximum Parsimony (MP) Tree phylogenetic analyses were also performed using the MEGA software [ , ], and bootstrap values were determined from 1000 replicates using the model which received the lowest BIC (Bayesian Information Criterion) scores in a comparative analysis of various models and is therefore considered to best describe the substitution pattern (Hasegawa-Kishino-Yano HKY or Tamura-Nei TN93 models). ..

Article Title: A low pathogenic avian influenza A/Mallard/South Korea/KNU2019-34/2019 (H1N1) virus has the potential to increase the mammalian pathogenicity.
Article Snippet: .. Subsequently, all 436 phylogenetic trees were constructed using the maximum-likelihood method under the Hasegawa-437 Kishino-Yano (HKY) model with gamma-distributed rates among sites (HYK + G) models, which was 438 selected by finding the best-fit substitution model in MEGA software, and the operation was repeated 439 1,000 times. ..

Article Title: A low pathogenic avian influenza A/Mallard/South Korea/KNU2019-34/2019 (H1N1) virus has the potential to increase the mammalian pathogenicity
Article Snippet: .. Subsequently, all phylogenetic trees were constructed using the maximum-likelihood method under the Hasegawa-Kishino-Yano (HKY) model with gamma-distributed rates among sites (HYK + G) models, which was selected by finding the best-fit substitution model in MEGA software, and the operation was repeated 1000 times. ..

Article Title: Epidemiological and genetic variation analysis of emerging porcine circovirus type 2 in Henan Province, 2023
Article Snippet: .. According to the MODELS program in the Molecular Evolutionary Genetics Analysis (MEGA) software (v.11.0), the ORF2 phylogenetic tree was constructed using the Maximum Likelihood method with the Hasegawa-Kishino-Yano model and a discrete Gamma distribution (HKY + G) to account for evolutionary rate differences among sites ( ). ..



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